Code
library(knitr)
library(targets)
library(MiscMetabar)
here::i_am("analysis/01_bioinformatics.qmd")
source(here::here("R/functions.R"))Where we see the pipeline processes
Date: December 1, 2025
library(knitr)
library(targets)
library(MiscMetabar)
here::i_am("analysis/01_bioinformatics.qmd")
source(here::here("R/functions.R"))#' ggplot theme for IdEst
#'
#' @description
#' This theme is used by Adrien Taudiere [IdEst](https://adrientaudiere.com/).
#' Based on [hrbrthemes](https://github.com/hrbrmstr/hrbrthemes/tree/master)
#' `hrbrthemes::theme_ipsum()` by boB Rudis.
#'
#' @param sans_family Font family for sans serif text (default is
#' "Roboto Condensed" on Windows and "Roboto Condensed Light" on other OS).
#' @param serif_family Font family for serif text (default is "Linux Libertine G").
#' @param mono_family Font family for monospaced text (default is "Fira Code").
#' @param base_size Base font size (default is 11.5).
#' @param plot_title_family Font family for title (default is serif_family).
#' @param plot_title_size Font size for title (default is 18).
#' @param plot_title_face Font face for title (default is "bold").
#' @param plot_title_margin Margin below title (default is 10).
#' @param subtitle_family Font family for subtitle (default is serif_family).
#' @param subtitle_size Font size for subtitle (default is 13).
#' @param subtitle_face Font face for subtitle (default is "plain").
#' @param subtitle_margin Margin below subtitle (default is 15).
#' @param subtitle_color Font color for subtitle (default is "grey30").
#' @param strip_text_family Font family for facet strip text (default is mono_family).
#' @param strip_text_size Font size for facet strip text (default is 13).
#' @param strip_text_face Font face for facet strip text (default is "plain").
#' @param strip_back_grey Logical, whether to use grey background for facet strips
#' (default is FALSE).
#' @param caption_family Font family for caption (default is sans_family).
#' @param caption_size Font size for caption (default is 9).
#' @param caption_face Font face for caption (default is "plain").
#' @param caption_margin Margin above caption (default is 10).
#' @param axis_text_size Font size for axis text (default is 80\% of base_size).
#' @param axis_text_family Font family for axis text (default is sans_family).
#' @param axis_title_family Font family for axis titles (default is mono_family).
#' @param axis_title_size Font size for axis titles (default is 12).
#' @param axis_title_face Font face for axis titles (default is "plain").
#' @param axis_title_just Justification for axis titles (default is "c" for center).
#' @param plot_margin Margin around the plot (default is margin(12, 12, 12, 12)).
#' @param panel_spacing Spacing between panels (default is unit(1.2, "lines")).
#' @param grid_col Color for grid lines (default is "#cccccc").
#' @param grid Logical or character, whether to show grid lines (default is TRUE).
#' @param axis_col Color for axis lines (default is "#cccccc").
#' @param axis Logical or character, whether to show axis lines (default is FALSE).
#' @param ticks Logical, whether to show axis ticks (default is FALSE).
#'
#' @return A ggplot2 theme object.
#' @author Adrien Taudiere
#' @export
#'
theme_idest <- function(
sans_family = if (.Platform$OS.type == "windows") {
"Roboto Condensed"
} else {
"Roboto Condensed Light"
},
serif_family = "Linux Libertine G",
mono_family = "Fira Code",
base_size = 11.5,
plot_title_family = serif_family,
plot_title_size = 18,
plot_title_face = "bold",
plot_title_margin = 10,
subtitle_family = serif_family,
subtitle_size = 13,
subtitle_face = "plain",
subtitle_margin = 15,
subtitle_color = "grey30",
strip_text_family = mono_family,
strip_text_size = 13,
strip_text_face = "plain",
strip_back_grey = FALSE,
caption_family = sans_family,
caption_size = 9,
caption_face = "plain",
caption_margin = 10,
axis_text_size = base_size * 0.8,
axis_text_family = sans_family,
axis_title_family = mono_family,
axis_title_size = 12,
axis_title_face = "plain",
axis_title_just = "c",
plot_margin = margin(12, 12, 12, 12),
panel_spacing = grid::unit(1.2, "lines"),
grid_col = "#cccccc",
grid = TRUE,
axis_col = "#cccccc",
axis = FALSE,
ticks = FALSE
) {
ret <- theme_minimal(base_family = sans_family, base_size = base_size)
ret <- ret + theme(legend.background = element_blank())
ret <- ret + theme(legend.key = element_blank())
ret <- ret + theme(plot.margin = plot_margin)
ret <- ret + theme(panel.spacing = panel_spacing)
if (inherits(grid, "character") | grid == TRUE) {
ret <- ret + theme(panel.grid = element_line(color = grid_col, linewidth = 0.2))
ret <- ret + theme(panel.grid.major = element_line(color = grid_col, linewidth = 0.2))
ret <- ret + theme(panel.grid.minor = element_line(color = grid_col, linewidth = 0.15))
if (inherits(grid, "character")) {
if (regexpr("X", grid)[1] < 0) {
ret <- ret + theme(panel.grid.major.x = element_blank())
}
if (regexpr("Y", grid)[1] < 0) {
ret <- ret + theme(panel.grid.major.y = element_blank())
}
if (regexpr("x", grid)[1] < 0) {
ret <- ret + theme(panel.grid.minor.x = element_blank())
}
if (regexpr("y", grid)[1] < 0) {
ret <- ret + theme(panel.grid.minor.y = element_blank())
}
}
} else {
ret <- ret + theme(panel.grid = element_blank())
ret <- ret + theme(panel.grid.major = element_blank())
ret <- ret + theme(panel.grid.major.x = element_blank())
ret <- ret + theme(panel.grid.major.y = element_blank())
ret <- ret + theme(panel.grid.minor = element_blank())
ret <- ret + theme(panel.grid.minor.x = element_blank())
ret <- ret + theme(panel.grid.minor.y = element_blank())
}
if (inherits(axis, "character") | axis == TRUE) {
ret <- ret + theme(axis.line = element_line(color = axis_col, linewidth = 0.15))
if (inherits(axis, "character")) {
axis <- tolower(axis)
if (regexpr("x", axis)[1] < 0) {
ret <- ret + theme(axis.line.x = element_blank())
} else {
ret <- ret + theme(axis.line.x = element_line(color = axis_col, linewidth = 0.15))
}
if (regexpr("y", axis)[1] < 0) {
ret <- ret + theme(axis.line.y = element_blank())
} else {
ret <- ret + theme(axis.line.y = element_line(color = axis_col, linewidth = 0.15))
}
} else {
ret <- ret + theme(axis.line.x = element_line(color = axis_col, linewidth = 0.15))
ret <- ret + theme(axis.line.y = element_line(color = axis_col, linewidth = 0.15))
}
} else {
ret <- ret + theme(axis.line = element_blank())
}
if (!ticks) {
ret <- ret + theme(axis.ticks = element_blank())
ret <- ret + theme(axis.ticks.x = element_blank())
ret <- ret + theme(axis.ticks.y = element_blank())
} else {
ret <- ret + theme(axis.ticks = element_line(linewidth = 0.15))
ret <- ret + theme(axis.ticks.x = element_line(linewidth = 0.15))
ret <- ret + theme(axis.ticks.y = element_line(linewidth = 0.15))
ret <- ret + theme(axis.ticks.length = grid::unit(5, "pt"))
}
xj <- switch(tolower(substr(axis_title_just, 1, 1)),
b = 0,
l = 0,
m = 0.5,
c = 0.5,
r = 1,
t = 1
)
yj <- switch(tolower(substr(axis_title_just, 2, 2)),
b = 0,
l = 0,
m = 0.5,
c = 0.5,
r = 1,
t = 1
)
ret <- ret + theme(axis.text = element_text(
size = axis_text_size,
family = axis_text_family,
margin = margin(t = 0, r = 0)
))
ret <- ret + theme(axis.text.x = element_text(
size = axis_text_size,
family = axis_text_family,
margin = margin(t = 0)
))
ret <- ret + theme(axis.text.y = element_text(
size = axis_text_size,
family = axis_text_family,
margin = margin(r = 0)
))
ret <- ret + theme(axis.title = element_text(size = axis_title_size, family = axis_title_family))
ret <- ret + theme(
axis.title.x = element_text(
hjust = xj,
size = axis_title_size,
family = axis_title_family,
face = axis_title_face
)
)
ret <- ret + theme(
axis.title.y = element_text(
hjust = yj,
size = axis_title_size,
family = axis_title_family,
face = axis_title_face
)
)
ret <- ret + theme(
axis.title.y.right = element_text(
hjust = yj,
size = axis_title_size,
angle = 90,
family = axis_title_family,
face = axis_title_face
)
)
ret <- ret + theme(
strip.text = element_text(
hjust = 0,
size = strip_text_size,
face = strip_text_face,
family = strip_text_family
)
)
ret <- ret + theme(
plot.title = element_text(
hjust = 0,
size = plot_title_size,
margin = margin(b = plot_title_margin),
family = plot_title_family,
face = plot_title_face
)
)
ret <- ret + theme(
plot.subtitle = element_text(
hjust = 0,
size = subtitle_size,
margin = margin(b = subtitle_margin),
family = subtitle_family,
face = subtitle_face,
color = subtitle_color
)
)
ret <- ret + theme(
plot.caption = element_text(
hjust = 1,
size = caption_size,
margin = margin(t = caption_margin),
family = caption_family,
face = caption_face
)
)
if (strip_back_grey) {
ret <- ret + theme(
strip.background = element_rect(fill = "grey90", color = NA),
panel.border = element_rect(color = "grey90", fill = NA)
)
}
ret
}
#' IdEst color palettes
#'
#' @description
#' Palettes of color for IdEst including also
#' some palettes from MoMAColors
#' <https://github.com/BlakeRMills/MoMAColors/blob/main/R/Functions.R>
#'
#' The available palette are c("all_color_idest", "ligth_color_idest",
#' "dark_color_idest", "Picabia", "Picasso", "Levine2", "Rattner", "Sidhu",
#' "Hokusai2", "Hokusai3")
#' @export
#' @author Adrien Taudiere
idest_pal <- list(
all_color_idest = list(
c(
"#dc863b",
"#faefd1",
"#2e7891",
"#8a9da4",
"#aa4c26",
"#c8a734",
"#a6d3e3",
"#003f5f",
"#ba63b6",
"#f20040",
"#774fa0",
"#b4dfa7"
),
c(1:11),
colorblind = FALSE
),
ligth_color_idest = list(
c("#faefd1", "#a6d3e3", "#b4dfa7", "#8a9da4"),
c(1:4),
colorblind = FALSE
),
dark_color_idest = list(
c(
"#dc863b",
"#2e7891",
"#aa4c26",
"#c8a734",
"#003f5f",
"#ba63b6",
"#f20040",
"#774fa0"
),
c(1:8),
colorblind = FALSE
),
Picabia = list(
c(
"#53362e",
"#744940",
"#9f7064",
"#c99582",
"#e6bcac",
"#e2d8d6",
"#a5a6ae",
"#858794",
"#666879",
"#515260",
"#3d3d47"
),
c(10, 4, 8, 1, 6, 3, 7, 2, 9, 5, 11),
colorblind = TRUE
),
Picasso = list(
c(
"#d5968c",
"#c2676d",
"#5c363a",
"#995041",
"#45939c",
"#0f6a81"
),
c(6, 3, 4, 2, 1, 5),
colorblind = TRUE
),
Levine2 = list(
c(
"#E3C1CB",
"#AD5A6B",
"#C993A2",
"#365C83",
"#384351",
"#4D8F8B",
"#CDD6AD"
),
c(7, 1, 5, 3, 6, 2, 4),
colorblind = TRUE
),
Rattner = list(
c(
"#de8e69",
"#f1be99",
"#c1bd38",
"#7a9132",
"#4c849a",
"#184363",
"#5d5686",
"#a39fc9"
),
c(1, 5, 6, 2, 3, 7, 8, 4),
colorblind = TRUE
),
Sidhu = list(
c(
"#af4646",
"#762b35",
"#005187",
"#251c4a",
"#78adb7",
"#4c9a77",
"#1b7975"
),
c(5, 2, 6, 7, 3, 4, 1),
colorblind = TRUE
),
Hokusai2 = list(c("#abc9c8", "#72aeb6", "#4692b0", "#2f70a1", "#134b73", "#0a3351"), c(5, 2, 4, 1, 6, 3), colorblind = TRUE), # copy from https://github.com/BlakeRMills/MetBrewer/blob/main/R/PaletteCode.R
Hokusai3 = list(c("#d8d97a", "#95c36e", "#74c8c3", "#5a97c1", "#295384", "#0a2e57"), c(4, 2, 5, 3, 1, 6), colorblind = TRUE) # copy from https://github.com/BlakeRMills/MetBrewer/blob/main/R/PaletteCode.R
)
#' IdEst continuous color scales for ggplot2
#'
#' @param palette_name The name of the palette to use.
#' The available palette are c("all_color_idest", "ligth_color_idest",
#' "dark_color_idest", "Picabia", "Picasso", "Levine2", "Rattner", "Sidhu",
#' "Hokusai2", "Hokusai3"). See [idest_pal] for more details.
#' @param direction Direction of the palette. 1 for standard, -1 for reversed.
#' @param ... Additional arguments passed to [ggplot2::scale_color_gradientn()].
#'
#' @returns A ggplot2 scale object.
#' @export
#' @author Adrien Taudiere
scale_color_idest_c <- function(palette_name = "all_color_idest", direction = 1, ...) {
`%notin%` <- Negate(`%in%`)
if (direction %notin% c(1, -1)) {
stop("Direction not valid. Please use 1 for standard palette or -1 for reversed palette.")
}
scale_color_gradientn(
colors = idest_colors(
palette_name = palette_name,
direction = direction,
override_order = F
),
...
)
}
#' IdEst continuous fill scales for ggplot2
#' @inheritParams scale_color_idest_c
#' @returns A ggplot2 scale object.
#' @export
#' @author Adrien Taudiere
scale_fill_idest_c <- function(palette_name = "all_color_idest", direction = 1, ...) {
`%notin%` <- Negate(`%in%`)
if (direction %notin% c(1, -1)) {
stop("Direction not valid. Please use 1 for standard palette or -1 for reversed palette.")
}
scale_color_gradientn(
colors = idest_colors(
palette_name = palette_name,
direction = direction,
override_order = F
),
...
)
}
#' IdEst discrete color scales for ggplot2
#'
#' @param palette_name The name of the palette to use.
#' The available palette are c("all_color_idest", "ligth_color_idest",
#' "dark_color_idest", "Picabia", "Picasso", "Levine2", "Rattner", "Sidhu",
#' "Hokusai2", "Hokusai3"). See [idest_pal] for more details.
#' @param direction Direction of the palette. 1 for standard, -1 for reversed.
#' @param override_order Logical (default FALSE),
#' whether to override the order of the palette.
#' @param ... Additional arguments passed to [ggplot2::scale_color_gradientn()].
#' @export
#' @returns A ggplot2 scale object.
#' @author Adrien Taudiere
scale_color_idest_d <- function(palette_name = "all_color_idest",
direction = 1,
override_order = FALSE,
...) {
discrete_scale(
aesthetics = "colour",
scale_name = "moma_d",
palette = function(n) {
idest_colors(
palette_name = palette_name,
n = n,
direction = direction,
override_order = override_order
)
},
...
)
}
#' IdEst discrete fill scales for ggplot2
#' @inheritParams scale_color_idest_d
#' @returns A ggplot2 scale object.
#' @export
#' @author Adrien Taudiere
scale_fill_idest_d <- function(palette_name = "all_color_idest",
direction = 1,
override_order = FALSE,
...) {
discrete_scale(
aesthetics = "fill",
scale_name = "moma_d",
palette = function(n) {
idest_colors(
palette_name = palette_name,
n = n,
direction = direction,
override_order = override_order
)
},
...
)
}
#' IdEst colors for ggplot theme_idest
#'
#' @param palette_name The name of the palette to use.
#' The available palette are c("all_color_idest", "ligth_color_idest",
#' "dark_color_idest", "Picabia", "Picasso", "Levine2", "Rattner", "Sidhu",
#' "Hokusai2", "Hokusai3"). See [idest_pal] for more details.
#' @param n Number of colors to return.
#' @param type Type of palette. Either "discrete" or "continuous".
#' @param direction Direction of the palette. 1 for standard, -1 for reversed.
#' @param override_order Logical, whether to override the order of the palette.
#'
#' @returns A vector of colors.
#' @author Adrien Taudiere
#' @export
idest_colors <- function(palette_name = "all_color_idest",
n,
type = c("discrete", "continuous"),
direction = c(1, -1),
override_order = FALSE) {
`%notin%` <- Negate(`%in%`)
palette <- idest_pal[[palette_name]]
if (is.null(palette) | is.numeric(palette_name)) {
stop("Palette does not exist.")
}
if (missing(n)) {
n <- length(palette[[1]])
}
if (missing(direction)) {
direction <- 1
}
if (direction %notin% c(1, -1)) {
stop("Direction not valid. Please use 1 for standard palette or -1 for reversed palette.")
}
if (missing(type)) {
if (n > length(palette[[1]])) {
type <- "continuous"
} else {
type <- "discrete"
}
}
type <- match.arg(type)
if (type == "discrete" && n > length(palette[[1]])) {
stop(
"Number of requested colors greater than what discrete palette can offer, \n use continuous instead."
)
}
continuous <- if (direction == 1) {
grDevices::colorRampPalette(palette[[1]])(n)
} else {
grDevices::colorRampPalette(rev(palette[[1]]))(n)
}
discrete <- if (direction == 1 & override_order == FALSE) {
palette[[1]][which(palette[[2]] %in% c(1:n) == TRUE)]
} else if (direction == -1 & override_order == FALSE) {
rev(palette[[1]][which(palette[[2]] %in% c(1:n) == TRUE)])
} else if (direction == 1 & override_order == TRUE) {
palette[[1]][1:n]
} else {
rev(palette[[1]])[1:n]
}
out <- switch(type,
continuous = continuous,
discrete = discrete
)
structure(out, class = "palette", name = palette_name)
}res_ga <- greenAlgoR::ga_targets(store = here::here("_targets/"))
print(paste0(res_ga$carbon_footprint_total_gCO2, " gCO2 equiv. emitted for the whole pipeline"))#> [1] "185.099466924978 gCO2 equiv. emitted for the whole pipeline"
log_data <- autometric::log_read(
here::here("data/data_final/autometric_log.txt"),
units_time = "hours",
units_memory = "gigabytes"
)
log_data |>
filter(!grepl("conclude:", phase)) |>
filter(!grepl("prepare:", phase)) |>
filter(!grepl("__DEFAULT__", phase)) |>
ggplot(aes(x = time, y = reorder(phase, desc(time)), color = resident)) +
geom_line(aes(linewidth = cpu)) +
scale_color_viridis_b("Memory (Gb)", end = 0.9, direction = -1) +
theme_idest() +
xlab("Time (in hours)") +
ylab("")You may want to select another targets such as d_asv or d_vs_mumu for example.
d_pq <- clean_pq(tar_read("d_vs", store=here::here("_targets/")))summary_plot_pq(d_pq)tar_glimpse(script=here::here("_targets.R"), targets_only = TRUE, callr_arguments = list(show = FALSE))tar_meta(store=here::here("_targets/"), targets_only = TRUE) |>
dplyr::mutate(time = paste0(seconds %/% 3600,":",seconds %/% 60,":",floor(seconds %% 60)))|>
dplyr::select(name, seconds, bytes, format, time) |>
dplyr::mutate(Gb=round(bytes/10^9,2)) |>
dplyr::arrange(desc(seconds), desc(bytes)) |>
kable()
|name | seconds| bytes|format |time | Gb|
|:--------------------------------|---------:|----------:|:------|:--------|----:|
|d_asv | 11972.998| 1097339|rds |3:199:32 | 0.00|
|tax_tab | 3971.426| 798938|rds |1:66:11 | 0.00|
|ddR | 2349.852| 141231407|qs |0:39:9 | 0.14|
|ddF | 1053.016| 130244592|qs |0:17:33 | 0.13|
|filtered | 525.178| 154|rds |0:8:45 | 0.00|
|quality_raw_seq | 469.384| 19034|rds |0:7:49 | 0.00|
|quality_seq_wo_primers | 469.014| 18891|rds |0:7:49 | 0.00|
|cutadapt | 345.924| 5439202491|file |0:5:45 | 5.44|
|quality_seq_filtered_trimmed_REV | 236.071| 11304|rds |0:3:56 | 0.00|
|quality_seq_filtered_trimmed_FW | 230.575| 11304|rds |0:3:50 | 0.00|
|derep_rs | 179.230| 2678399208|qs |0:2:59 | 2.68|
|err_rs | 170.105| 24428|qs |0:2:50 | 0.00|
|derep_fs | 169.472| 1681165403|qs |0:2:49 | 1.68|
|err_fs | 163.737| 21602|qs |0:2:43 | 0.00|
|track_sequences_samples_clusters | 103.993| 443|rds |0:1:43 | 0.00|
|merged_seq | 100.951| 1408727|qs |0:1:40 | 0.00|
|track_by_samples | 99.281| 8932|rds |0:1:39 | 0.00|
|seqtab_wo_chimera | 14.227| 805785|rds |0:0:14 | 0.00|
|bioinfo_report | 10.633| 0|rds |0:0:10 | 0.00|
|d_vs_mumu | 5.841| 889413|rds |0:0:5 | 0.00|
|d_vs | 4.078| 902883|rds |0:0:4 | 0.00|
|d_vs_mumu_rarefy | 0.770| 856846|rds |0:0:0 | 0.00|
|seq_tab_Pairs | 0.171| 957602|rds |0:0:0 | 0.00|
|data_phyloseq | 0.105| 1026818|rds |0:0:0 | 0.00|
|s_d | 0.060| 12331|rds |0:0:0 | 0.00|
|data_raw | 0.026| 5224|rds |0:0:0 | 0.00|
|seqtab | 0.010| 798807|rds |0:0:0 | 0.00|
|asv_tab | 0.010| 798670|rds |0:0:0 | 0.00|
|sam_tab | 0.004| 6974|rds |0:0:0 | 0.00|
|file_sam_data_csv | 0.002| 24577|file |0:0:0 | 0.00|
|fastq_files_folder | 0.001| 6578858328|file |0:0:0 | 6.58|
|file_refseq_taxo | 0.001| 72883169|file |0:0:0 | 0.07|
|samp_n_otu_table | 0.001| 1974|rds |0:0:0 | 0.00|
|data_fnfs | 0.000| 2675|rds |0:0:0 | 0.00|
|data_fnrs | 0.000| 2675|rds |0:0:0 | 0.00|
d_pq <- tar_read("d_vs", store=here::here("_targets/"))The {targets} package is at the core of this project. Please read the intro of the user manual if you don’t know {targets}.
The {targets} package store … targets in a folder and can load (tar_load()) and read (tar_read) object from this folder.
DT::datatable(d_pq@sam_data)kable(tar_read(track_sequences_samples_clusters, store=here::here("_targets/")))
| | nb_sequences| nb_clusters| nb_samples|
|:------------------------------------------------------|------------:|-----------:|----------:|
|Raw Forward sequences | 15651813| NA| 375|
|Forward wo primers | 15358185| NA| 375|
|Forward sequences | 14080888| 29767| 359|
|Paired sequences | 9858255| 12427| 359|
|Paired sequences without chimera | 9521256| 10314| 359|
|Paired sequences without chimera and longer than 200bp | 9486698| 10154| 359|
|ASV denoising | 9457849| 10154| 358|
|OTU after vsearch reclustering at 97% | 9457849| 4483| 358|
|OTU vs after mumu cleaning algorithm | 9457849| 4132| 332|
|OTU vs + mumu + rarefaction by sequencing depth | 590000| 3541| 295|
tab_samp <- tar_read(track_by_samples, store=here::here("_targets/"))
for (li in names(tab_samp)) {
print(knitr::kable(tab_samp[[li]], caption = li, format="html"))
cat('\n<!-- -->\n\n')
}| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32638 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 32638 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 32638 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32800 | 142 | 1 |
| OTU after vsearch reclustering at 97% | 32800 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 32800 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 96 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30887 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 30887 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 30887 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32509 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 32509 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 32509 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44333 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 44333 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 44333 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20014 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 20014 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 20014 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34676 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 34676 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 34676 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43787 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 43787 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 43787 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29108 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 29108 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 29108 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32794 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 32794 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 32794 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38461 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 38461 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 38461 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30435 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 30435 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 30435 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38056 | 92 | 1 |
| OTU after vsearch reclustering at 97% | 38056 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 38056 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35930 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 35930 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 35930 | 82 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26521 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 26521 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 26521 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36188 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 36188 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 36188 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27642 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 27642 | 149 | 1 |
| OTU vs after mumu cleaning algorithm | 27642 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 73 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 73 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 73 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39116 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 39116 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 39116 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33534 | 126 | 1 |
| OTU after vsearch reclustering at 97% | 33534 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 33534 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39127 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 39127 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 39127 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42480 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 42480 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 42480 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28651 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 28651 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 28651 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37517 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 37517 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 37517 | 102 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 85 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 478 | 3 | 1 |
| OTU after vsearch reclustering at 97% | 478 | 3 | 1 |
| OTU vs after mumu cleaning algorithm | 478 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32968 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 32968 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 32968 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 32 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 32 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33028 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 33028 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 33028 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33175 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 33175 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 33175 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26265 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 26265 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 26265 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47924 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 47924 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 47924 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21388 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 21388 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 21388 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31892 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 31892 | 6 | 1 |
| OTU vs after mumu cleaning algorithm | 31892 | 6 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 6 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31818 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 31818 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 31818 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37039 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 37039 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 37039 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32984 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 32984 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 32984 | 115 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41508 | 161 | 1 |
| OTU after vsearch reclustering at 97% | 41508 | 127 | 1 |
| OTU vs after mumu cleaning algorithm | 41508 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27707 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 27707 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 27707 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18037 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 18037 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 18037 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52044 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 52044 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 52044 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34880 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 34880 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 34880 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33135 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 33135 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 33135 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35616 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 35616 | 127 | 1 |
| OTU vs after mumu cleaning algorithm | 35616 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15084 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 15084 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 15084 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20297 | 134 | 1 |
| OTU after vsearch reclustering at 97% | 20297 | 122 | 1 |
| OTU vs after mumu cleaning algorithm | 20297 | 118 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28977 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 28977 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 28977 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30285 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 30285 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 30285 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19459 | 93 | 1 |
| OTU after vsearch reclustering at 97% | 19459 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 19459 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 31 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 31 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26320 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 26320 | 83 | 1 |
| OTU vs after mumu cleaning algorithm | 26320 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24639 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 24639 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 24639 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14794 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 14794 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 14794 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 8631 | 34 | 1 |
| OTU after vsearch reclustering at 97% | 8631 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 8631 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21061 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 21061 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 21061 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20468 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 20468 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 20468 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38792 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 38792 | 120 | 1 |
| OTU vs after mumu cleaning algorithm | 38792 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32604 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 32604 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 32604 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 104 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30807 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 30807 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 30807 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40656 | 148 | 1 |
| OTU after vsearch reclustering at 97% | 40656 | 124 | 1 |
| OTU vs after mumu cleaning algorithm | 40656 | 124 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33209 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 33209 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 33209 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25660 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 25660 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 25660 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39358 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 39358 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 39358 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27965 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 27965 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 27965 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44134 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 44134 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 44134 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40286 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 40286 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 40286 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36217 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 36217 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 36217 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41219 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 41219 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 41219 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31275 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 31275 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 31275 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28316 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 28316 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 28316 | 111 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33951 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 33951 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 33951 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22942 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 22942 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 22942 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36015 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 36015 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 36015 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19292 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 19292 | 96 | 1 |
| OTU vs after mumu cleaning algorithm | 19292 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33979 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 33979 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 33979 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31651 | 136 | 1 |
| OTU after vsearch reclustering at 97% | 31651 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 31651 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27873 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 27873 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 27873 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42903 | 161 | 1 |
| OTU after vsearch reclustering at 97% | 42903 | 133 | 1 |
| OTU vs after mumu cleaning algorithm | 42903 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29548 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 29548 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 29548 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30453 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 30453 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 30453 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 78 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28491 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 28491 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 28491 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25862 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 25862 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 25862 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49496 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 49496 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 49496 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 27 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 27 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38864 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 38864 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 38864 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40939 | 159 | 1 |
| OTU after vsearch reclustering at 97% | 40939 | 132 | 1 |
| OTU vs after mumu cleaning algorithm | 40939 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1405 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 1405 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 1405 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37745 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 37745 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 37745 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31599 | 164 | 1 |
| OTU after vsearch reclustering at 97% | 31599 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 31599 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27159 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 27159 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 27159 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35072 | 152 | 1 |
| OTU after vsearch reclustering at 97% | 35072 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 35072 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 54 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 54 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38558 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 38558 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 38558 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 159 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 159 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 159 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26246 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 26246 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 26246 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24283 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 24283 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 24283 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43290 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 43290 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 43290 | 85 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 148 | 11 | 1 |
| OTU after vsearch reclustering at 97% | 148 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 148 | 11 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34057 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 34057 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 34057 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39159 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 39159 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 39159 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2197 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 2197 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 2197 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 9 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29987 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 29987 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 29987 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35855 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 35855 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35855 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38573 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 38573 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 38573 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28037 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 28037 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 28037 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27592 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 27592 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 27592 | 117 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33801 | 144 | 1 |
| OTU after vsearch reclustering at 97% | 33801 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 33801 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28543 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 28543 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 28543 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44927 | 14 | 1 |
| OTU after vsearch reclustering at 97% | 44927 | 10 | 1 |
| OTU vs after mumu cleaning algorithm | 44927 | 10 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 10 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 292 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 292 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 292 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32535 | 27 | 1 |
| OTU after vsearch reclustering at 97% | 32535 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 32535 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30146 | 26 | 1 |
| OTU after vsearch reclustering at 97% | 30146 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 30146 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24269 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 24269 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 24269 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28512 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 28512 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 28512 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24741 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 24741 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 24741 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39333 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 39333 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 39333 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28102 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 28102 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 28102 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28174 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 28174 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 28174 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33762 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 33762 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 33762 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30082 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 30082 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 30082 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40930 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 40930 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 40930 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39874 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 39874 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 39874 | 111 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44609 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 44609 | 135 | 1 |
| OTU vs after mumu cleaning algorithm | 44609 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37795 | 157 | 1 |
| OTU after vsearch reclustering at 97% | 37795 | 125 | 1 |
| OTU vs after mumu cleaning algorithm | 37795 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48235 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 48235 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 48235 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31545 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 31545 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 31545 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25525 | 122 | 1 |
| OTU after vsearch reclustering at 97% | 25525 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 25525 | 102 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 21 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 21 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 3826 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 3826 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 3826 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37760 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 37760 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 37760 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39396 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 39396 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 39396 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37203 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 37203 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 37203 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 772 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 772 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 772 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38177 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 38177 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 38177 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38594 | 134 | 1 |
| OTU after vsearch reclustering at 97% | 38594 | 111 | 1 |
| OTU vs after mumu cleaning algorithm | 38594 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30071 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 30071 | 138 | 1 |
| OTU vs after mumu cleaning algorithm | 30071 | 136 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55777 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 55777 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 55777 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29089 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 29089 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 29089 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21045 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 21045 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 21045 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1382 | 32 | 1 |
| OTU after vsearch reclustering at 97% | 1382 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 1382 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63807 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 63807 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 63807 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35936 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 35936 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 35936 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37957 | 129 | 1 |
| OTU after vsearch reclustering at 97% | 37957 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 37957 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32105 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 32105 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 32105 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26940 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 26940 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 26940 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33313 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 33313 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 33313 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17375 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 17375 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 17375 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47979 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 47979 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 47979 | 92 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 26 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 26 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32556 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 32556 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 32556 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43138 | 111 | 1 |
| OTU after vsearch reclustering at 97% | 43138 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 43138 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 1 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 1 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33676 | 44 | 1 |
| OTU after vsearch reclustering at 97% | 33676 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 33676 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36653 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 36653 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 36653 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30758 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 30758 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 30758 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35935 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 35935 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 35935 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26035 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 26035 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 26035 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22155 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 22155 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 22155 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42328 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 42328 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 42328 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1033 | 24 | 1 |
| OTU after vsearch reclustering at 97% | 1033 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 1033 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40604 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 40604 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 40604 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23180 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 23180 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 23180 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46305 | 26 | 1 |
| OTU after vsearch reclustering at 97% | 46305 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 46305 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27242 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 27242 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 27242 | 94 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33025 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 33025 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 33025 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35649 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 35649 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 35649 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42520 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 42520 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 42520 | 88 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37596 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 37596 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 37596 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41112 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 41112 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 41112 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40677 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 40677 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 40677 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46588 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 46588 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 46588 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 34 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 34 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43301 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 43301 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 43301 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38974 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 38974 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 38974 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11583 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 11583 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 11583 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35315 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 35315 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 35315 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34203 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 34203 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 34203 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33488 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 33488 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 33488 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45605 | 38 | 1 |
| OTU after vsearch reclustering at 97% | 45605 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 45605 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38750 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 38750 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 38750 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45186 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 45186 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 45186 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 627 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 627 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 627 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56952 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 56952 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 56952 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23291 | 7 | 1 |
| OTU after vsearch reclustering at 97% | 23291 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 23291 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 4 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38854 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 38854 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 38854 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20795 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 20795 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 20795 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41587 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 41587 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 41587 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29803 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 29803 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 29803 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36530 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 36530 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 36530 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35213 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 35213 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 35213 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1673 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 1673 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 1673 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 51 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 51 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20325 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 20325 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 20325 | 98 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 86 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35959 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 35959 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 35959 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25855 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 25855 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 25855 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28317 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 28317 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 28317 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20317 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 20317 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 20317 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27770 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 27770 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 27770 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39190 | 38 | 1 |
| OTU after vsearch reclustering at 97% | 39190 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 39190 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44759 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 44759 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 44759 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39031 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 39031 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 39031 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31386 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 31386 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 31386 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32622 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 32622 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 32622 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43714 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 43714 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 43714 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27159 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 27159 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 27159 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34068 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 34068 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 34068 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28834 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 28834 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 28834 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31094 | 32 | 1 |
| OTU after vsearch reclustering at 97% | 31094 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 31094 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48553 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 48553 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 48553 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35133 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 35133 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 35133 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40872 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 40872 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 40872 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 179 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 179 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 179 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36863 | 117 | 1 |
| OTU after vsearch reclustering at 97% | 36863 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 36863 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 78 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 78 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 78 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 314 | 6 | 1 |
| OTU after vsearch reclustering at 97% | 314 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 314 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23763 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 23763 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 23763 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27320 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 27320 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 27320 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47864 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 47864 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 47864 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38946 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 38946 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 38946 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26201 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 26201 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 26201 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36873 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 36873 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 36873 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 85 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33352 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 33352 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 33352 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 67 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 67 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 67 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39358 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 39358 | 111 | 1 |
| OTU vs after mumu cleaning algorithm | 39358 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20187 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 20187 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 20187 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 98 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 98 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 98 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28674 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 28674 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 28674 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19356 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 19356 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 19356 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40772 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 40772 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 40772 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 425 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 425 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 425 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 310 | 13 | 1 |
| OTU after vsearch reclustering at 97% | 310 | 13 | 1 |
| OTU vs after mumu cleaning algorithm | 310 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1765 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 1765 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 1765 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 372 | 8 | 1 |
| OTU after vsearch reclustering at 97% | 372 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 372 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38308 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 38308 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 38308 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 510 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 510 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 510 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 48 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 48 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35381 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 35381 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 35381 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36406 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 36406 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 36406 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31804 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 31804 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 31804 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7329 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 7329 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 7329 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29413 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 29413 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 29413 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37829 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 37829 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 37829 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32192 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 32192 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 32192 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25379 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 25379 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 25379 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21661 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 21661 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 21661 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28887 | 119 | 1 |
| OTU after vsearch reclustering at 97% | 28887 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 28887 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9891 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 9891 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 9891 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24791 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 24791 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 24791 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26588 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 26588 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 26588 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20124 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 20124 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 20124 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40911 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 40911 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 40911 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36041 | 44 | 1 |
| OTU after vsearch reclustering at 97% | 36041 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 36041 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34484 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 34484 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 34484 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 147 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 147 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 147 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 190 | 3 | 1 |
| OTU after vsearch reclustering at 97% | 190 | 3 | 1 |
| OTU vs after mumu cleaning algorithm | 190 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33326 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 33326 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 33326 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 130 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 405 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 405 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 405 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34457 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 34457 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 34457 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44924 | 42 | 1 |
| OTU after vsearch reclustering at 97% | 44924 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 44924 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27005 | 129 | 1 |
| OTU after vsearch reclustering at 97% | 27005 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 27005 | 107 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26758 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 26758 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 26758 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34130 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 34130 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 34130 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30757 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 30757 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 30757 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35102 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 35102 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 35102 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22005 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 22005 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 22005 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31344 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 31344 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 31344 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41121 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 41121 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 41121 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31011 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 31011 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 31011 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34555 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 34555 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 34555 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15814 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 15814 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 15814 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26927 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 26927 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 26927 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29682 | 77 | 1 |
| OTU after vsearch reclustering at 97% | 29682 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 29682 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38500 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 38500 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 38500 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39646 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 39646 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 39646 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 559 | 6 | 1 |
| OTU after vsearch reclustering at 97% | 559 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 559 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43668 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 43668 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 43668 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28547 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 28547 | 95 | 1 |
| OTU vs after mumu cleaning algorithm | 28547 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7786 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 7786 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 7786 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38415 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 38415 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 38415 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40928 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 40928 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 40928 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37572 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 37572 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 37572 | 11 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 11 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30591 | 22 | 1 |
| OTU after vsearch reclustering at 97% | 30591 | 13 | 1 |
| OTU vs after mumu cleaning algorithm | 30591 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 13 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31827 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 31827 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 31827 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28671 | 11 | 1 |
| OTU after vsearch reclustering at 97% | 28671 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 28671 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 9 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29268 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 29268 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 29268 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 5 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 393 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 393 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 393 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37976 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 37976 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 37976 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20571 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 20571 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 20571 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20729 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 20729 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 20729 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17866 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 17866 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 17866 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25067 | 111 | 1 |
| OTU after vsearch reclustering at 97% | 25067 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 25067 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24545 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 24545 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 24545 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10963 | 44 | 1 |
| OTU after vsearch reclustering at 97% | 10963 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 10963 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17343 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 17343 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 17343 | 83 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33006 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 33006 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 33006 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 20 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 20 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29219 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 29219 | 94 | 1 |
| OTU vs after mumu cleaning algorithm | 29219 | 93 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28152 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 28152 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 28152 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36650 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 36650 | 122 | 1 |
| OTU vs after mumu cleaning algorithm | 36650 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20337 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 20337 | 97 | 1 |
| OTU vs after mumu cleaning algorithm | 20337 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 88 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27803 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 27803 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 27803 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10514 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 10514 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 10514 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25909 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 25909 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 25909 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28260 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 28260 | 102 | 1 |
| OTU vs after mumu cleaning algorithm | 28260 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36413 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 36413 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 36413 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21441 | 117 | 1 |
| OTU after vsearch reclustering at 97% | 21441 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 21441 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46337 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 46337 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 46337 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32270 | 136 | 1 |
| OTU after vsearch reclustering at 97% | 32270 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 32270 | 117 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25882 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 25882 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 25882 | 111 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 96 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29991 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 29991 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 29991 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26238 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 26238 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 26238 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35125 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 35125 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35125 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33655 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 33655 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 33655 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31490 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 31490 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 31490 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33105 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 33105 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 33105 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26770 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 26770 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 26770 | 99 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 88 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22145 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 22145 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 22145 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27193 | 164 | 1 |
| OTU after vsearch reclustering at 97% | 27193 | 148 | 1 |
| OTU vs after mumu cleaning algorithm | 27193 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40868 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 40868 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 40868 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28300 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 28300 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 28300 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28161 | 139 | 1 |
| OTU after vsearch reclustering at 97% | 28161 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 28161 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35331 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 35331 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 35331 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32906 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 32906 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 32906 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27790 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 27790 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 27790 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30298 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 30298 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 30298 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37112 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 37112 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 37112 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32828 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 32828 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 32828 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26173 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 26173 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 26173 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19259 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 19259 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 19259 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27725 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 27725 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 27725 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16900 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 16900 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 16900 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10154 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4483 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31599 | 152 | 1 |
| OTU after vsearch reclustering at 97% | 31599 | 126 | 1 |
| OTU vs after mumu cleaning algorithm | 31599 | 124 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19447 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 19447 | 125 | 1 |
| OTU vs after mumu cleaning algorithm | 19447 | 108 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
krona(
clean_pq(d_pq, simplify_taxo = TRUE),
file = here::here("data/data_final/krona_nb_seq.html")
)krona(
clean_pq(d_pq, simplify_taxo = TRUE),
nb_seq = FALSE,
file = here::here("data/data_final/krona_nb_taxa.html")
)Session information are detailed below. More information about the machine, the system, as well as python and R packages, are available in the file data/data_final/information_run.txt .
sessionInfo()#> R version 4.5.1 (2025-06-13)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Kali GNU/Linux Rolling
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.29.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
#> [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
#> [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Europe/Paris
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices datasets utils methods base
#>
#> other attached packages:
#> [1] MiscMetabar_0.14.4 purrr_1.2.0 dplyr_1.1.4 dada2_1.38.0
#> [5] Rcpp_1.1.0 ggplot2_4.0.1 phyloseq_1.54.0 targets_1.11.4
#> [9] knitr_1.50
#>
#> loaded via a namespace (and not attached):
#> [1] greenAlgoR_0.1.2 bitops_1.0-9
#> [3] deldir_2.0-4 permute_0.9-8
#> [5] rlang_1.1.6 magrittr_2.0.4
#> [7] ade4_1.7-23 matrixStats_1.5.0
#> [9] compiler_4.5.1 mgcv_1.9-4
#> [11] png_0.1-8 callr_3.7.6
#> [13] vctrs_0.6.5 reshape2_1.4.5
#> [15] autometric_0.1.2 stringr_1.6.0
#> [17] pwalign_1.6.0 pkgconfig_2.0.3
#> [19] crayon_1.5.3 fastmap_1.2.0
#> [21] backports_1.5.0 XVector_0.50.0
#> [23] labeling_0.4.3 Rsamtools_2.26.0
#> [25] rmarkdown_2.30 ps_1.9.1
#> [27] xfun_0.54 cachem_1.1.0
#> [29] cigarillo_1.0.0 jsonlite_2.0.0
#> [31] biomformat_1.38.0 rhdf5filters_1.22.0
#> [33] DelayedArray_0.36.0 Rhdf5lib_1.32.0
#> [35] BiocParallel_1.44.0 jpeg_0.1-11
#> [37] parallel_4.5.1 prettyunits_1.2.0
#> [39] cluster_2.1.8.1 R6_2.6.1
#> [41] bslib_0.9.0 stringi_1.8.7
#> [43] RColorBrewer_1.1-3 benchmarkme_1.0.8
#> [45] jquerylib_0.1.4 GenomicRanges_1.62.0
#> [47] Seqinfo_1.0.0 SummarizedExperiment_1.40.0
#> [49] iterators_1.0.14 IRanges_2.44.0
#> [51] Matrix_1.7-4 splines_4.5.1
#> [53] igraph_2.2.1 tidyselect_1.2.1
#> [55] rstudioapi_0.17.1 abind_1.4-8
#> [57] yaml_2.3.10 vegan_2.7-2
#> [59] doParallel_1.0.17 codetools_0.2-20
#> [61] hwriter_1.3.2.1 processx_3.8.6
#> [63] lattice_0.22-7 tibble_3.3.0
#> [65] plyr_1.8.9 Biobase_2.70.0
#> [67] withr_3.0.2 ShortRead_1.68.0
#> [69] S7_0.2.1 benchmarkmeData_1.0.4
#> [71] evaluate_1.0.5 survival_3.8-3
#> [73] RcppParallel_5.1.11-1 Biostrings_2.78.0
#> [75] pillar_1.11.1 BiocManager_1.30.27
#> [77] MatrixGenerics_1.22.0 DT_0.34.0
#> [79] renv_1.0.11 foreach_1.5.2
#> [81] stats4_4.5.1 generics_0.1.4
#> [83] rprojroot_2.1.1 S4Vectors_0.48.0
#> [85] scales_1.4.0 base64url_1.4
#> [87] glue_1.8.0 tools_4.5.1
#> [89] interp_1.1-6 data.table_1.17.8
#> [91] GenomicAlignments_1.46.0 visNetwork_2.1.4
#> [93] rhdf5_2.54.0 grid_4.5.1
#> [95] ape_5.8-1 crosstalk_1.2.2
#> [97] latticeExtra_0.6-31 nlme_3.1-168
#> [99] cli_3.6.5 viridisLite_0.4.2
#> [101] S4Arrays_1.10.0 gtable_0.3.6
#> [103] sass_0.4.10 digest_0.6.39
#> [105] BiocGenerics_0.56.0 SparseArray_1.10.3
#> [107] htmlwidgets_1.6.4 farver_2.1.2
#> [109] htmltools_0.5.8.1 multtest_2.66.0
#> [111] lifecycle_1.0.4 httr_1.4.7
#> [113] here_1.0.2 secretbase_1.0.5
#> [115] MASS_7.3-65
@online{taudière2025,
author = {Taudière, Adrien},
title = {Bioinformatics Pipeline Summary},
date = {2025-12-01},
langid = {en}
}